PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G40880.1
Common NameMHK7.11, ZFWD3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 472aa    MW: 51297.5 Da    PI: 9.1833
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G40880.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07146170126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +k + C+f+   G Ck G++C+F H+
  AT5G40880.1 146 PKKSVCNFWKD-GNCKKGEKCQFLHS 170
                  68999******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.896145172IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6145171IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5146170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6147170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-7147170IPR000571Zinc finger, CCCH-type
SuperFamilySSF509785.43E-44171224IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.3E-41176471IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.3E-4176215IPR001680WD40 repeat
PfamPF004000.0046182215IPR001680WD40 repeat
PROSITE profilePS5008212.814183224IPR001680WD40 repeat
PROSITE profilePS5029417.139183387IPR017986WD40-repeat-containing domain
PROSITE patternPS006780202216IPR019775WD40 repeat, conserved site
PRINTSPR003205.2E-7202216IPR020472G-protein beta WD-40 repeat
SMARTSM00320140255292IPR001680WD40 repeat
SuperFamilySSF509785.43E-44262470IPR017986WD40-repeat-containing domain
SMARTSM003204.6E-4300338IPR001680WD40 repeat
PfamPF004004.5E-5302338IPR001680WD40 repeat
PROSITE profilePS5008210.308308347IPR001680WD40 repeat
PROSITE patternPS006780325339IPR019775WD40 repeat, conserved site
PRINTSPR003205.2E-7325339IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0019341378IPR001680WD40 repeat
PfamPF004000.0096343377IPR001680WD40 repeat
PRINTSPR003205.2E-7365379IPR020472G-protein beta WD-40 repeat
SMARTSM003202428465IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGHQSSWMKQ TVIDSVVQSS KVGVFSMFSM DYKAPRKYSH GRNFGVARQQ DFAADIVTRR  60
PYAPYDNGMK KGPNKLSRNL VWTSKEYKSP EGNRPRQNAA NGSAKPQVIG TGHRVSNQPR  120
KNAVYGPRSS SLSDTRGCGP RLNGSPKKSV CNFWKDGNCK KGEKCQFLHS WSCFPGLAMV  180
AALEGHKNDI KGIALPQGSD KLFSVSGDGT LLIWDCNSGQ CVRSINLQAE AGSLISEGPW  240
VFLGLPNAVK AFNVQNSKDV HLEGVVGQVH AMTAANGMLF AGTSSGSILV WKATDSESDP  300
FKYLTSLEGH HSGEVTCFVV GGEVLYSGSV DKTIKVWDLN TLQCRMTLKQ HIGTVTSLLC  360
WDKCLISSSL DGTIKLWACS ENESLKVVQT RKQELSVHTL CGMHDAEAKP IMFCSYQNGA  420
VGIFDLPSFE ERGKMFSTQT ICTLTIGPGG LLFSGDKSGN LRVWSLASGT KV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B2e-13155386168396F-box/WD repeat protein 7
2ovq_B2e-13155386168396F-box/WD repeat protein 7
2ovr_B2e-13155386168396F-box/WD repeat protein 7
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425682330.0
Genevisible249319_s_at1e-169
Expression AtlasAT5G40880-
AtGenExpressAT5G40880-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G40880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G40880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0304000.0BT030400.1 Arabidopsis thaliana At5g40880 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198904.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLC0SVR80.0C0SVR8_ARATH; Putative uncharacterized protein At5g40880 (Fragment)
STRINGAT5G40880.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Representative plantOGRP10651624
Publications ? help Back to Top
  1. Terol J,Bargues M,P
    ZFWD: a novel subfamily of plant proteins containing a C3H zinc finger and seven WD40 repeats.
    Gene, 2000. 260(1-2): p. 45-53
    [PMID:11137290]
  2. Boisson B,Giglione C,Meinnel T
    Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote.
    J. Biol. Chem., 2003. 278(44): p. 43418-29
    [PMID:12912986]
  3. Oh S,Park S,Han KH
    Transcriptional regulation of secondary growth in Arabidopsis thaliana.
    J. Exp. Bot., 2003. 54(393): p. 2709-22
    [PMID:14585825]
  4. Zhang Y,Wu Y,Liu Y,Han B
    Computational identification of 69 retroposons in Arabidopsis.
    Plant Physiol., 2005. 138(2): p. 935-48
    [PMID:15923328]
  5. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  6. Ma S,Gong Q,Bohnert HJ
    Dissecting salt stress pathways.
    J. Exp. Bot., 2006. 57(5): p. 1097-107
    [PMID:16510518]
  7. Knight CA, et al.
    Expression profiling and local adaptation of Boechera holboellii populations for water use efficiency across a naturally occurring water stress gradient.
    Mol. Ecol., 2006. 15(5): p. 1229-37
    [PMID:16626450]
  8. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  9. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  10. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]